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TPMT

Drugs affected by TPMT

Thiopurine S-methyltransferase

3 medications 4 brand products

About TPMT

TPMT helps inactivate thiopurines, including azathioprine, mercaptopurine, and thioguanine. Reduced function can increase susceptibility to severe bone-marrow toxicity. The CPIC 2025 update interprets TPMT and NUDT15 together.[1]

Intermediate metabolism in both genes differs from an intermediate result in one gene alone. DNA-inferred function is distinct from a measured TPMT enzyme activity. Neither replaces blood-count monitoring.

What we test for TPMT

Gene2Rx uses definitions covering 49 named TPMT star alleles, built from 45 variants in Gene2Rx definitions. Results depend on the variants available in your upload.

49
Star alleles
45
Defined variants
Gene2Rx definitions
Source
GRCh38
Genome build
Normal Function 1 Decreased Function 1 No Function 38 Uncertain Function 7 Unknown Function 2

Notable TPMT alleles

*1 Normal Function
Reference allele — normal TPMT activity.
*3A No Function
The most common no-function allele in European populations; carriers are at high risk for thiopurine toxicity.
~5% in Europeans
*3C No Function
A no-function allele common in African and East Asian populations.
*2 No Function
A rarer no-function allele caused by a single missense variant.
What are star alleles?

Star alleles (like *1, *2, *4) are standardized names for distinct versions of a pharmacogene. *1 is the reference; other numbers identify distinct allele definitions. A higher number does not mean lower function.

You inherit one allele from each parent, so your genotype is a pair (e.g. *1/*4). The pair determines your predicted phenotype — for example, whether you metabolize a drug at a normal, decreased, or no-function rate.

PharmVar is the international registry that defines and curates these allele names. Gene2Rx uses the supported definitions summarized here. Coverage depends on the variants present in your input; this is not a guarantee that every cataloged allele can be identified.

Medications with TPMT information

This list contains 3 medications with TPMT information from the sources shown below. Evidence and report eligibility differ by drug; each page explains its scope and limitations.

Brand products containing a TPMT-affected ingredient

These branded medications include at least one active ingredient whose metabolism or action involves TPMT. Each links to its full pharmacogenetic breakdown.

References

  1. CPIC. CPIC: TPMT/NUDT15 thiopurine guideline, 2025 update (2026). pmc.ncbi.nlm.nih.gov

Explore TPMT in your report

A Gene2Rx report interprets supported variants in the context of your data and purchased report. Missing or uncertain calls may prevent an assessment.

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Informational only, not medical advice. The presence of a TPMT pharmacogenetic guideline does not mean every patient needs to change their dose. Never start, stop, or change a medication without talking to your prescribing clinician.

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